Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 34
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    3679150 C>T  Pum=1.0  Qui=0.2  Rio=0.857

17 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0      4        2    6.9
Qui1     Qui    81.0     21        0    8.8
Qui2     Qui    84.0     25        2    6.9
Qui3     Qui    76.9     13        0    6.8
Qui4     Qui    77.8     36        1    6.2
Rio1     Rio    44.4      9        2    7.3
Rio2     Rio    55.6     45        2    8.7
Rio3     Rio    80.0     20        2    6.4
Rio4     Rio    48.9     45        2    7.5