Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     2.6     39        0   59.5
Qui1     Qui    50.0     10        0   15.0
Qui2     Qui    37.5      8        0   11.0
Qui3     Qui    57.1      7        0   12.0
Qui4     Qui    40.0     10        0   18.0
Rio1     Rio     5.3     19        0   28.0
Rio2     Rio     8.7     23        0   36.0
Rio3     Rio     0.0      5        0   10.0
Rio4     Rio     0.0     29        0   48.5