Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 49
  seen in >= 2 oysters: 25
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

35 CpGs in target; 33 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.9   1906        0   79.1
Qui1     Qui    27.3    311        0   15.2
Qui2     Qui    33.1    236        1    9.4
Qui3     Qui    43.6    296        0   12.1
Qui4     Qui    31.5    324        0   17.8
Rio1     Rio     1.3    937        1   36.2
Rio2     Rio     6.1    787        0   37.2
Rio3     Rio    19.3    254        1    9.8
Rio4     Rio     1.5   1670        0   73.9