Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 13
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

12 CpGs in target; 12 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    90.2     41        0    9.0
Qui1     Qui    23.4     47        0    9.0
Qui2     Qui    38.0     71        0    9.0
Qui3     Qui    30.6     62        0   11.6
Qui4     Qui    33.3     51        0    9.3
Rio1     Rio    53.8     65        0   11.1
Rio2     Rio    61.3     62        0    9.7
Rio3     Rio    46.3     54        0    9.3
Rio4     Rio    59.0     78        0   10.3