Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 15
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

19 CpGs in target; 9 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    14.3     42        0    4.9
Qui1     Qui    68.1     47        0    8.3
Qui2     Qui     0.0     42        0    8.6
Qui3     Qui    55.7     70        0   11.3
Qui4     Qui     0.0     32        0    6.9
Rio1     Rio    78.9     76        0   10.3
Rio2     Rio    87.7     73        0   11.6
Rio3     Rio    91.8     49        0    6.6
Rio4     Rio    89.8     49        0   10.1