Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

21 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    63.8     58        0    4.2
Qui1     Qui    61.3     62        0    4.0
Qui2     Qui    70.8    161        0    7.6
Qui3     Qui    68.0    100        0    4.9
Qui4     Qui    57.7     26        0    2.0
Rio1     Rio    72.7     55        0    4.1
Rio2     Rio    70.7     75        0    3.9
Rio3     Rio    88.2     76        1    4.8
Rio4     Rio    88.6     79        0    5.7