Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    47.4     19        0   26.0
Qui1     Qui   100.0      1        0    2.0
Qui2     Qui    85.7      7        0   11.0
Qui3     Qui   100.0      2        0    5.0
Qui4     Qui    66.7      3        0    8.5
Rio1     Rio    15.8     19        0   28.5
Rio2     Rio   100.0      2        0    3.5
Rio3     Rio    27.3     11        0   26.0
Rio4     Rio    42.9     21        0   37.0