Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 9
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

15 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     1.3    149        0    9.7
Qui1     Qui    12.1    140        0    8.9
Qui2     Qui    41.7    120        0    7.9
Qui3     Qui    35.4    113        0    7.6
Qui4     Qui    21.5     65        0    4.6
Rio1     Rio     1.8    225        0   15.4
Rio2     Rio     0.6    166        0   11.5
Rio3     Rio     0.0    146        0   10.0
Rio4     Rio     1.0    205        0   13.4