Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 3]
    14176871 C>T  Pum=1.0  Qui=0.125  Rio=0.75
    14176915 C>T  Pum=0.5  Qui=0.111  Rio=0.632
    14176936 G>A  Pum=0.857  Qui=0.08  Rio=0.8

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    11.1      9        1   15.0
Qui1     Qui    80.0      5        0   10.0
Qui2     Qui    66.7      6        1   10.0
Qui3     Qui    85.7      7        0   12.0
Qui4     Qui   100.0      5        0    9.0
Rio1     Rio     0.0      7        1   11.5
Rio2     Rio     0.0      4        1   13.0
Rio3     Rio    20.0      5        1    9.0
Rio4     Rio    27.3     11        0   13.0