Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 47
  seen in >= 2 oysters: 12
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 8  [CpG-destroying: 4]
    14176027 C>T  Pum=  Qui=0.0  Rio=0.667
    14176081 A>G  Pum=1.0  Qui=0.0  Rio=0.636
    14176382 T>A  Pum=1.0  Qui=0.0  Rio=0.714
    14176741 T>C  Pum=0.929  Qui=0.208  Rio=0.742
    14176786 C>A  Pum=0.833  Qui=0.0  Rio=0.667
    14176871 C>T  Pum=1.0  Qui=0.125  Rio=0.75
    14176915 C>T  Pum=0.5  Qui=0.111  Rio=0.632
    14176936 G>A  Pum=0.857  Qui=0.08  Rio=0.8

11 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    58.1     62        2    9.5
Qui1     Qui    90.7     43        0    6.8
Qui2     Qui    72.5     40        1    6.1
Qui3     Qui    78.9     57        1    6.7
Qui4     Qui    96.8     31        0    6.5
Rio1     Rio    62.2     45        3    8.0
Rio2     Rio    66.7     36        1    8.5
Rio3     Rio    71.9     32        1    6.0
Rio4     Rio    50.8     61        0    7.3