Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 31
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    13629912 C>T  Pum=  Qui=0.167  Rio=0.889

32 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     1.0    105        0    5.1
Qui1     Qui    54.2    144        0    7.0
Qui2     Qui     3.0     67        0    4.3
Qui3     Qui    60.2     98        0    6.2
Qui4     Qui     0.0     38        0    3.4
Rio1     Rio     0.7    134        0    7.4
Rio2     Rio     1.3     75        0    4.2
Rio3     Rio     3.0     67        0    3.9
Rio4     Rio     0.0    159        0    9.6