Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 31
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    13626258 C>A  Pum=  Qui=0.0  Rio=0.958
    13626996 C>T  Pum=  Qui=0.0  Rio=0.727

17 CpGs in target; 11 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     33        0    5.4
Qui1     Qui    30.6     49        0    7.3
Qui2     Qui     0.0     15        0    3.5
Qui3     Qui    60.4     48        0   10.2
Qui4     Qui     0.0     35        0    4.9
Rio1     Rio     1.3     78        0    8.0
Rio2     Rio     2.2     45        0    7.5
Rio3     Rio     5.0     20        0    3.6
Rio4     Rio     0.0     63        0   11.2