Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    13112101 C>T  Pum=  Qui=0.167  Rio=0.714

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      9        0   12.0
Qui1     Qui    85.7      7        0   14.0
Qui2     Qui   100.0      2        0   11.0
Qui3     Qui    85.7      7        0   18.0
Qui4     Qui   100.0      4        0    4.0
Rio1     Rio    16.7      6        0    9.0
Rio2     Rio    66.7      3        0   11.0
Rio3     Rio    40.0      5        0    6.0
Rio4     Rio    38.5     13        0   15.0