Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    13061007 C>T  Pum=  Qui=0.0  Rio=0.714

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    25.0      8        0   10.0
Qui1     Qui   100.0      2        0    6.0
Qui2     Qui   100.0      3        0    6.0
Qui3     Qui   100.0      5        0    6.0
Qui4     Qui   100.0      7        0    9.5
Rio1     Rio    12.5      8        1   13.5
Rio2     Rio     0.0      3        0    6.0
Rio3     Rio   100.0      2        0    2.5
Rio4     Rio    16.7      6        1   11.0