Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 25
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 2]
    13061007 C>T  Pum=  Qui=0.0  Rio=0.714
    13061134 G>T  Pum=1.0  Qui=0.0  Rio=0.778
    13061184 G>A  Pum=1.0  Qui=0.0  Rio=0.857
    13061231 A>G  Pum=1.0  Qui=0.0  Rio=0.783
    13061617 A>G  Pum=0.833  Qui=0.0  Rio=0.733

11 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    60.0     55        0    6.6
Qui1     Qui    84.0     50        0    6.8
Qui2     Qui    88.9      9        0    2.1
Qui3     Qui    95.0     40        0    3.7
Qui4     Qui    89.1     46        0    4.1
Rio1     Rio    66.7     39        1    5.9
Rio2     Rio    67.4     43        0    4.2
Rio3     Rio    95.5     22        0    2.8
Rio4     Rio    71.9     57        1    4.7