Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 34
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    11633225 T>A  Pum=0.333  Qui=0.125  Rio=0.676

27 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    43.5     46        0    5.3
Qui1     Qui    79.2     24        1    4.0
Qui2     Qui    64.3     14        0    2.8
Qui3     Qui    76.7     30        1    5.4
Qui4     Qui    80.8     26        0    3.0
Rio1     Rio     0.0     38        0    4.8
Rio2     Rio    40.6     32        0    4.1
Rio3     Rio    12.1     33        0    4.6
Rio4     Rio     0.0     16        0    2.5