Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 1]
    11610750 A>G  Pum=0.5  Qui=0.053  Rio=0.897
    11610768 C>T  Pum=  Qui=0.111  Rio=1.0
    11610773 A>G  Pum=0.25  Qui=0.038  Rio=0.63

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    40.0      5        1    8.0
Qui1     Qui    83.3      6        0   10.0
Qui2     Qui    50.0      2        0    4.0
Qui3     Qui   100.0      3        0    5.0
Qui4     Qui   100.0      4        0    5.0
Rio1     Rio     0.0      7        1   10.0
Rio2     Rio    25.0      8        0    8.0
Rio3     Rio              0        0    0.0
Rio4     Rio     0.0      4        1    9.0