Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 18
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

8 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    78.9     38        0    9.4
Qui1     Qui    27.8     18        0    6.1
Qui2     Qui    46.2     26        0    6.4
Qui3     Qui    29.4     34        0    9.3
Qui4     Qui    39.4     33        0    5.8
Rio1     Rio    65.9     44        0   11.3
Rio2     Rio    69.4     36        0    6.5
Rio3     Rio    55.0     20        0    6.9
Rio4     Rio    60.0     40        0    8.7