Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    62828578 G>T  Pum=0.0  Qui=0.389  Rio=0.933
    62828582 G>A  Pum=0.0  Qui=0.421  Rio=0.933

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      8        0   11.0
Qui1     Qui     0.0      3        0    3.0
Qui2     Qui    66.7      6        0    8.0
Qui3     Qui    57.1      7        0   11.5
Qui4     Qui    66.7      3        0    6.0
Rio1     Rio     0.0      3        0    9.0
Rio2     Rio     0.0      6        0   12.0
Rio3     Rio    50.0      2        0    4.0
Rio4     Rio     0.0      4        0    7.0