Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    13.3     15        0   19.0
Qui1     Qui    12.5      8        0    9.0
Qui2     Qui    58.8     17        0   21.5
Qui3     Qui    35.7     14        0   18.0
Qui4     Qui    60.0      5        0   10.5
Rio1     Rio     0.0      8        0   13.0
Rio2     Rio     0.0     11        0   12.5
Rio3     Rio     0.0     12        0   16.0
Rio4     Rio     0.0     12        0   15.5