Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    57243572 G>A  Pum=0.143  Qui=0.643  Rio=0.071

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    14.3      7        0    8.0
Qui1     Qui     9.1     11        0   11.0
Qui2     Qui    50.0      6        0    6.0
Qui3     Qui    20.0      5        0    6.0
Qui4     Qui    33.3      6        0    8.0
Rio1     Rio    91.7     12        0   13.0
Rio2     Rio    72.7     11        0   11.0
Rio3     Rio    88.9      9        0   10.0
Rio4     Rio   100.0     10        0   10.0