Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    27.8     36        0   51.0
Qui1     Qui    45.0     20        0   32.0
Qui2     Qui    44.8     29        0   42.5
Qui3     Qui    48.1     27        0   46.5
Qui4     Qui    34.5     29        0   42.0
Rio1     Rio    93.3     15        0   23.5
Rio2     Rio    76.2     21        0   29.5
Rio3     Rio    90.5     21        0   32.0
Rio4     Rio    68.8     16        0   26.0