Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 22
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

40 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    79.1     67        0    2.7
Qui1     Qui    39.3     89        0    4.0
Qui2     Qui    35.2    159        0    5.4
Qui3     Qui    33.7    187        0    6.3
Qui4     Qui    37.3    118        0    4.7
Rio1     Rio    67.1    170        0    6.0
Rio2     Rio    27.9     43        0    2.0
Rio3     Rio    60.3    151        0    6.0
Rio4     Rio    61.5     96        0    4.2