Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 23
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

13 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    25.0     24        0    7.4
Qui1     Qui    46.5     71        0   11.5
Qui2     Qui    23.6     55        0    8.5
Qui3     Qui    27.3     55        0    7.5
Qui4     Qui    23.1     65        0    8.8
Rio1     Rio    52.6     19        0    7.4
Rio2     Rio    39.3     28        0    6.1
Rio3     Rio    65.4     26        0    8.1
Rio4     Rio    32.1     28        0    7.7