Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 45
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

37 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    32.6    129        0    4.5
Qui1     Qui    32.8    235        0    8.9
Qui2     Qui    48.9    227        0    6.0
Qui3     Qui    66.7     75        0    3.0
Qui4     Qui    38.2    123        0    5.3
Rio1     Rio    23.1    251        0    8.9
Rio2     Rio    36.7     98        0    2.9
Rio3     Rio    24.9    185        0    5.3
Rio4     Rio    21.8    335        0    9.7