Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 8
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 1]
    26536010 G>A  Pum=  Qui=1.0  Rio=0.231
    26536045 T>A  Pum=1.0  Qui=0.963  Rio=0.233
    26536055 G>T  Pum=1.0  Qui=1.0  Rio=0.31

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum              0        0    9.0
Qui1     Qui              0        0   12.0
Qui2     Qui              0        0    5.0
Qui3     Qui              0        0    6.5
Qui4     Qui              0        0    9.0
Rio1     Rio   100.0      7        0   15.0
Rio2     Rio              0        0   10.0
Rio3     Rio    75.0      4        0   10.0
Rio4     Rio   100.0     10        0   14.0