Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 48
  seen in >= 2 oysters: 18
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    25014135 C>T  Pum=  Qui=0.448  Rio=0.962
    25014204 A>C  Pum=  Qui=0.35  Rio=0.895

9 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    30.4     23        0    5.4
Qui1     Qui    30.0     10        0    3.7
Qui2     Qui    45.8     24        1    6.4
Qui3     Qui    76.5     17        3    7.6
Qui4     Qui    55.0     20        2    8.1
Rio1     Rio    32.1     28        2    6.9
Rio2     Rio    33.3     21        2    5.6
Rio3     Rio    25.0     12        2    4.9
Rio4     Rio    42.9     14        2    6.1