Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    1107345 C>T  Pum=0.0  Qui=0.0  Rio=0.667

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    60.0      5        0   14.0
Qui1     Qui    62.5     16        0   17.0
Qui2     Qui    66.7      9        0   15.0
Qui3     Qui    80.0      5        0   12.0
Qui4     Qui    55.6      9        0   12.0
Rio1     Rio    25.0     12        1   19.5
Rio2     Rio     0.0      6        1   13.0
Rio3     Rio    25.0      8        0   10.0
Rio4     Rio    28.6      7        1   14.0