Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 27
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

25 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     23        0    2.2
Qui1     Qui     0.0     20        0    3.7
Qui2     Qui              0        0    1.0
Qui3     Qui     0.0     13        0    5.0
Qui4     Qui     0.0      6        0    5.0
Rio1     Rio     2.8     36        0    4.9
Rio2     Rio    20.0     40        0    3.5
Rio3     Rio     0.0     39        0    4.8
Rio4     Rio     2.0     51        0    4.4