Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 9 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    87.5     56        0    8.6
Qui1     Qui    32.1     28        0    8.0
Qui2     Qui    41.2     34        0    8.0
Qui3     Qui    96.7     30        0    6.6
Qui4     Qui    41.9     43        0    9.4
Rio1     Rio    90.0     50        0   11.4
Rio2     Rio    91.5     47        0   10.2
Rio3     Rio    95.0     20        0    4.8
Rio4     Rio    95.3     43        0   10.6