Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 13
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

5 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      9        0    9.0
Qui1     Qui    11.1      9        0    8.6
Qui2     Qui    20.0     15        0   10.4
Qui3     Qui    51.9     27        0   10.8
Qui4     Qui    20.0     15        0   10.4
Rio1     Rio     0.0     21        0    9.8
Rio2     Rio     0.0     22        0    9.5
Rio3     Rio     0.0     15        0    9.1
Rio4     Rio     0.0     12        0    6.4