Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      1        0    8.0
Qui1     Qui    33.3      3        0    9.0
Qui2     Qui    50.0      2        0    5.5
Qui3     Qui   100.0      2        0    9.0
Qui4     Qui     0.0      3        0    7.0
Rio1     Rio     0.0      7        0   12.5
Rio2     Rio     0.0      3        0   11.0
Rio3     Rio     0.0      1        0    3.0
Rio4     Rio     0.0      2        0    9.0