Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 51
  seen in >= 2 oysters: 10
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

32 CpGs in target; 20 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     4.0     75        1    9.0
Qui1     Qui    46.3     67        0    6.0
Qui2     Qui    37.3     59        0    3.9
Qui3     Qui    46.7     90        0    7.6
Qui4     Qui    35.8     95        1    6.2
Rio1     Rio     0.8    130        1    9.7
Rio2     Rio     0.0     89        1   10.3
Rio3     Rio     0.0     40        0    4.3
Rio4     Rio     3.5     57        0    6.2