Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 62
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

19 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     3.6     55        0    5.6
Qui1     Qui    10.3     68        1    6.5
Qui2     Qui    13.8     29        0    4.4
Qui3     Qui    10.8     37        1    6.0
Qui4     Qui    23.1     39        0    5.0
Rio1     Rio     2.0    102        0    8.5
Rio2     Rio     1.5     65        0    6.3
Rio3     Rio     0.0     35        0    3.7
Rio4     Rio     2.5     40        0    5.4