Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 2]
    69288754 G>A  Pum=  Qui=0.923  Rio=0.385
    69288776 C>A  Pum=1.0  Qui=1.0  Rio=0.353
    69288801 C>T  Pum=1.0  Qui=1.0  Rio=0.357

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      3        0    7.0
Qui1     Qui     0.0      4        0    8.0
Qui2     Qui     0.0      3        0    5.0
Qui3     Qui    50.0      2        0    4.0
Qui4     Qui     0.0      4        0    7.0
Rio1     Rio    25.0      4        0    8.0
Rio2     Rio    33.3      3        0    5.0
Rio3     Rio              0        0    7.5
Rio4     Rio    83.3      6        0    8.0