Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 47
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

54 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    86.3    102        0    4.3
Qui1     Qui     2.5    119        0    4.9
Qui2     Qui     0.0     58        0    2.8
Qui3     Qui     0.0     86        0    3.0
Qui4     Qui     1.9    107        0    4.4
Rio1     Rio    67.7    158        0    5.1
Rio2     Rio    24.7     81        1    3.4
Rio3     Rio     2.4     42        0    1.7
Rio4     Rio    43.3    150        0    5.3