Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 36
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    65268084 T>C  Pum=0.0  Qui=0.545  Rio=0.0

40 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      6        0    3.6
Qui1     Qui    60.0     25        0    2.6
Qui2     Qui    82.8    116        0   10.3
Qui3     Qui    89.7     68        1    5.8
Qui4     Qui    81.6     38        0    2.6
Rio1     Rio    35.5     31        0    5.3
Rio2     Rio     0.0     35        0    4.9
Rio3     Rio     0.0     29        0    7.1
Rio4     Rio    29.8     57        0    5.2