Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 41
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

21 CpGs in target; 15 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    69.8     53        0    7.1
Qui1     Qui    38.0     92        0    8.1
Qui2     Qui    31.0     42        0    8.8
Qui3     Qui    30.1     83        0    9.5
Qui4     Qui    13.3     45        0    4.2
Rio1     Rio    67.4     92        0    8.4
Rio2     Rio    64.3     14        0    3.2
Rio3     Rio    67.9     28        0    5.5
Rio4     Rio    75.5    110        0    9.1