Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    59255829 T>C  Pum=0.3  Qui=0.655  Rio=0.031
    59255863 C>T  Pum=0.5  Qui=0.905  Rio=0.056

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      1        0    9.0
Qui1     Qui    50.0      2        0    7.0
Qui2     Qui     0.0      1        0    4.0
Qui3     Qui   100.0      2        0   10.5
Qui4     Qui   100.0      1        0    5.0
Rio1     Rio     0.0      2        0    9.0
Rio2     Rio     0.0      3        0    8.5
Rio3     Rio              0        0    2.0
Rio4     Rio     0.0      4        0    7.5