Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 35
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    54165033 C>T  Pum=0.0  Qui=0.263  Rio=0.774

25 CpGs in target; 12 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     3.0     33        0    7.8
Qui1     Qui    22.6     53        3    6.0
Qui2     Qui     8.2     73        1    9.0
Qui3     Qui     6.4     78        1    8.6
Qui4     Qui     0.0     20        0    5.8
Rio1     Rio    44.0     75        3    8.1
Rio2     Rio    33.6    122        1    8.7
Rio3     Rio    26.0     50        2    7.0
Rio4     Rio    18.4     76        1    7.6