Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    53927158 C>T  Pum=0.0  Qui=0.333  Rio=1.0
    53927209 T>C  Pum=0.0  Qui=0.292  Rio=0.902

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      2        0    8.0
Qui1     Qui   100.0      3        1   11.0
Qui2     Qui    33.3      3        1   13.0
Qui3     Qui   100.0      1        1   15.0
Qui4     Qui              0        0    4.0
Rio1     Rio     0.0      4        1   11.5
Rio2     Rio     0.0      1        1   11.0
Rio3     Rio              0        1   12.0
Rio4     Rio     0.0      1        1   14.0