Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 74
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    53904852 G>A  Pum=0.0  Qui=0.0  Rio=0.5

10 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    72.9     48        0    7.9
Qui1     Qui    57.7     26        1    4.1
Qui2     Qui    50.0     24        0    6.4
Qui3     Qui    62.5     48        0    7.2
Qui4     Qui    88.2     34        0    6.2
Rio1     Rio     4.1     49        0    7.1
Rio2     Rio     4.5     22        0    3.2
Rio3     Rio     4.2     24        0    4.4
Rio4     Rio     6.5     31        0    6.6