Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 18
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    53903173 C>A  Pum=0.0  Qui=0.471  Rio=1.0

12 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    90.4     73        0    9.0
Qui1     Qui    44.6     65        0    8.6
Qui2     Qui    65.0     60        0    8.7
Qui3     Qui    54.7     75        0    9.9
Qui4     Qui    86.7     45        0    9.1
Rio1     Rio     2.9     70        0   10.5
Rio2     Rio     6.5     46        0    6.9
Rio3     Rio     0.0     50        0    7.1
Rio4     Rio     0.0     56        0    9.9