Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 34
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 2]
    53901305 A>T  Pum=0.0  Qui=0.235  Rio=1.0
    53901823 C>T  Pum=0.0  Qui=0.429  Rio=1.0
    53901825 C>T  Pum=0.0  Qui=0.4  Rio=1.0

9 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    76.0     25        0    5.6
Qui1     Qui    42.9     14        0    6.3
Qui2     Qui    76.5     17        0    6.6
Qui3     Qui    46.9     32        0    6.6
Qui4     Qui    88.0     25        0    4.2
Rio1     Rio     0.0     29        0    7.4
Rio2     Rio     0.0     18        0    7.7
Rio3     Rio     0.0      9        0    4.3
Rio4     Rio     0.0     27        0    6.3