Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 37
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 1]
    53879496 G>A  Pum=0.909  Qui=0.333  Rio=1.0
    53879654 A>G  Pum=0.25  Qui=0.179  Rio=0.7
    53879676 T>A  Pum=0.154  Qui=0.04  Rio=0.7

22 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    46.9    113        0   10.1
Qui1     Qui    80.0     40        0    4.4
Qui2     Qui    50.0    100        0    6.0
Qui3     Qui    56.5     62        0    5.9
Qui4     Qui    80.0     80        0    7.0
Rio1     Rio     0.0     57        0    4.1
Rio2     Rio     1.7     60        0    4.4
Rio3     Rio     0.0     50        0    3.7
Rio4     Rio     0.0     23        0    2.1