Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    53860321 G>A  Pum=0.0  Qui=0.341  Rio=0.976
    53860344 A>T  Pum=0.077  Qui=0.327  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0     11        0   13.0
Qui1     Qui    70.0     10        0   11.0
Qui2     Qui    58.3     12        0   13.0
Qui3     Qui    38.5     13        0   18.5
Qui4     Qui   100.0     10        0   11.0
Rio1     Rio     0.0      7        0    9.0
Rio2     Rio     6.2     16        0   17.5
Rio3     Rio     0.0     11        0   13.5
Rio4     Rio     0.0      7        0    9.0