Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 10
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 0]
    53847440 A>G  Pum=0.0  Qui=0.179  Rio=0.792
    53847441 T>G  Pum=0.1  Qui=0.312  Rio=0.933

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    83.3      6        0   11.0
Qui1     Qui    60.0      5        0   10.0
Qui2     Qui    28.6     14        0   14.5
Qui3     Qui    18.2     11        0   17.0
Qui4     Qui    83.3      6        0    8.0
Rio1     Rio     0.0      6        0   13.0
Rio2     Rio     0.0     14        0   21.0
Rio3     Rio     0.0      4        0    7.5
Rio4     Rio     0.0      5        0   10.5