Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      9        0   11.0
Qui1     Qui    50.0      6        0   14.0
Qui2     Qui    50.0      8        0   13.0
Qui3     Qui    66.7      6        1   10.0
Qui4     Qui   100.0      2        0    7.0
Rio1     Rio    14.3      7        0   13.0
Rio2     Rio     8.3     12        0   14.5
Rio3     Rio    16.7      6        0   10.0
Rio4     Rio    11.1      9        0   13.0