Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 48
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 1]
    53657484 G>A  Pum=0.0  Qui=0.2  Rio=1.0
    53657741 C>A  Pum=0.0  Qui=0.443  Rio=1.0
    53657785 C>A  Pum=0.0  Qui=0.491  Rio=1.0

27 CpGs in target; 19 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.9    109        0   10.5
Qui1     Qui    19.4    160        3   10.8
Qui2     Qui    49.4     89        2   10.0
Qui3     Qui    24.9    245        0   15.1
Qui4     Qui     0.0    100        0    9.0
Rio1     Rio    76.7     90        3   10.6
Rio2     Rio    92.4     79        0    5.5
Rio3     Rio    76.4    123        0    8.7
Rio4     Rio    62.9    116        0   10.8