Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    53628126 G>A  Pum=0.0  Qui=0.0  Rio=0.778

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    85.7      7        0   13.5
Qui1     Qui   100.0      5        0   10.0
Qui2     Qui   100.0      2        0    8.5
Qui3     Qui              0        0    6.5
Qui4     Qui   100.0      4        0   12.0
Rio1     Rio     0.0      6        0   20.0
Rio2     Rio     0.0      2        0    7.5
Rio3     Rio     0.0      4        0   10.0
Rio4     Rio     0.0      5        0    8.0